Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQEKLKSKLDQAKGGAKEGFGKIT------GDKELEAKG-FI------EKTIAKGKELA-----DDAKDAVEGAVDAVKEKLK
1J9E Chain:A ((43-112))
--------------GGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLK
General information:
TITO was launched using:
RESULT:
Template:
1J9E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8087 for 242 contacts (33.4/contact) +
2D Compatibility (PS) -5404 + (NN) -133 + (LL) 1172
1D Compatibility (HY) -3600 + (ID) 1250
Total energy: -1128.0 ( -4.66 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_1J9E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J9E-query.scw
PDB file :
Tito_Scwrl_1J9E.pdb
: