Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFYLVRHGKTQWNLEGRFQGANGDSPLLEEAIEELEELGQYLSSIHFDAVYSSDLGRARDTVNILNDANSCPKEIHYTPQLREWALGTLEGCKIATMQAIYPRQMTAFYQNPLQFKHDMFGAESLYQTTHRVESFLRSLASKNYDK-VLIVGHGANLTASIRSLLGYQYGSLHYKDKLDNASLTIIETHDFKDFNCLTWNDKSYLRQEVKMTH
4IJ5 Chain:A ((2-189))
VKLILVRHAESEWNPVGRYQGLL-DPDLSERGKKQAKLLAQELSREHLDVIYSSPLKRTYLTALEIAEAKNL--EVIKEDRIIEIDHGMWSGMLVEEVMEKYPEDFRRWVEEP--HKVEFQGGESLASVYNRVKGFLEEVRKRHWNQTVVVVSHTVPMRAMYCALLGVDLSKF-WSFGCDNASYSVIHMEERRNVILKLNITCHLGEFYVEAHK
General information:
TITO was launched using:
RESULT:
Template:
4IJ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64268 for 1549 contacts (-41.5/contact) +
2D Compatibility (PS) -20116 + (NN) -4410 + (LL) 92
1D Compatibility (HY) -14000 + (ID) 2750
Total energy: -105452.0 ( -68.08 by residue)
QMean score : 0.500
(partial model without unconserved sides chains):
PDB file :
Tito_4IJ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IJ5-query.scw
PDB file :
Tito_Scwrl_4IJ5.pdb
: