Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKNKIKKTLVDQILDKAKIEHDSLQLDALQGDLPNGIQKQDIFKTLALIGDKTGPIIGILPLTEHLSEKKLAKISGNKKVQMIPQKDLQKITGYIHGANNPIGIRQKHNYPI--FIDTIALEKQELIVSAGEIGRSIRINSEVLADFVNAKFADIKE
2CX5 Chain:A ((42-157))
-------------------------------------GAEVGQIVKSLVFVGEK-GAYLFLVSGKNRLDLGKATRLVGGPLRQATPE-EVRELTGFAIGGVPPVG----HNTPLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTGAQVADLKE
General information:
TITO was launched using:
RESULT:
Template:
2CX5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47463 for 858 contacts (-55.3/contact) +
2D Compatibility (PS) -12507 + (NN) -3071 + (LL) 3060
1D Compatibility (HY) -4800 + (ID) 1550
Total energy: -66331.0 ( -77.31 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_2CX5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CX5-query.scw
PDB file :
Tito_Scwrl_2CX5.pdb
: