Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLIIGIFSLIIIAILAWQGFSFLKHKEIKLQQAVVEKEIRIAEKTVEVVKRQKTERVLFLEPKGYDKSLSADILKWNQKSFEHKKFYDNQYIILRPQLADSNFANVKKLSIYQILYQKEKGSMFQKSSRLLRTYLLDQNKKPFELDELLAHNISGFKAILENIAPGTQLKEHDSNKEFLKTGRVTDGLDVKDGKLIINDLKLPLDKLYNVIDESYLKSSDLDLVSNLKAKAPRVALTFDDGPNEKTTPKALEILKRYNAKATFFVMGQSAVGHTDILQRMHAEGHEIGNHTWDHPNLTKLPAEKIKEEIHKTNDLIMKATG-QKPVYLRPPYGATNATVKTVT---GLKEMLWSVDTEDWKNHNTQA---MMTNIKKQLRPGGVILMHDIHQTSIDALPTIMDYLITQGYYFVTVGELYSTP |
| 1W17 Chain:A ((50-252)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SLIEKYDAFYLGNTKEKT--IYLTFDNGYENGYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNHSFHHPDLTTKTADQIQDELDSVNEEVYKITGKQDNLYLRPPRGVFSEYVLKETKRLGYQTVFWSVAFVDWKINNQKGKKYAYDHMIKQAHPGAIYLLHTVSRDNAEALDDAITDLKKQGYTFKSIDDLMFEK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1W17.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -78406 for 1596 contacts (-49.1/contact) +
2D Compatibility (PS) -21356 + (NN) -12620 + (LL) 17268
1D Compatibility (HY) -12000 + (ID) 3600
Total energy: -110714.0 ( -69.37 by residue)
QMean score : 0.421
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