Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYLEQLKEVNPLTICITNNVVKNFTANGLLALGASPAMSECIEDLEDLLKVANALLINIGTLTKESWQLYQEAIKIANKNQVPVVLDPVAAGASRFRLEVSLDLLKNYSISLLRGNGSEIAALVGEKQASKGADGGKVADLESIAVKANQVFDVPVVVTGETDAIAVRGEVRLLQNGSPLMPLVTGTGCLLGAVLAAFIGSSDRSDDLACLTEAMTVYNVSGEIAEKVAKGKGVGSFQVAFLDALSQMKSEMIMDK
1EKQ Chain:A ((10-262))
--LTAVRRHSPLVHSITNNVVTNFTANGLLALGASPVMAYAKEEVADMAKIAGALVLNIGTLSKESVEAMIIAGKSANEHGVPVILDPVGAGATPFRTESARDIIREVRLAAIRGNAAEIAHTVG-------------GDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAG-LLTSVVGAFCAVEE--NPLFAAIAAISSYGVAAQLAAQQTADKGPGSFQIELLNKLSTVTEQDVQEW
General information:
TITO was launched using:
RESULT:
Template:
1EKQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -197055 for 2143 contacts (-92.0/contact) +
2D Compatibility (PS) -25489 + (NN) -7901 + (LL) 704
1D Compatibility (HY) -14000 + (ID) 5100
Total energy: -248841.0 ( -116.12 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_1EKQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EKQ-query.scw
PDB file :
Tito_Scwrl_1EKQ.pdb
: