Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDAKFDFAKLLVYKAGQFIKSEMQNTFDVEEKSRFDDLVTSLDKKTQKLLIQEIIQHYPDDNILAEEDDV---RSPIAQGNVWVLDPIDGTVNFIVQKDNFAVMLAYYEEGVGQFGIIYDVMADILYSGGGHFDVYANDKKIVPFQECPLERCLL--GVNSAMYAEN----DCGIAHLASETL-GVRIYGGAGISMAKVMQGKLLAYFSY-IQPWDYAAAKIMGETLGFTLLTLDGEEPNYSTRQKVMFLPKSKLNLIQSYLTKK
4AS5 Chain:A ((9-249))
----MDYAVILARQAGEMIREALKNEMDVMIKSSPADLVTVTDQKVEKMLMSSIKEKYPCHSFIGEESVAAGEKTVFTEQPTWVIDPIDGTTNFVHRFPFVAVSIGFLVNKEMEFGIVYSCVEDKMYTGRKGKGAFCNGQKLQVSQQEDITKSLLVTELGSSRKPETLRIVLSNMEKLCSIPIHGIRSVGTAAVNMCLVATGGADAYYEMGIHCWDMAGAGIIVTEAGGVLMDVTGGPFDLMSRRIIAANSITLAKRIAKEIEII
General information:
TITO was launched using:
RESULT:
Template:
4AS5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139240 for 1853 contacts (-75.1/contact) +
2D Compatibility (PS) -24942 + (NN) -10610 + (LL) 340
1D Compatibility (HY) -14800 + (ID) 3550
Total energy: -192802.0 ( -104.05 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_4AS5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AS5-query.scw
PDB file :
Tito_Scwrl_4AS5.pdb
: