Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLFQEKIAYNCAKKEALYKESLGRYALRSMLAGAYLTMSTAAGIVAADTIGKI-----SPALSGFVFAFIFSFGLIYVLIFNGELATSNMLYLTAGAYNKNISWKKAITILIYCTFFNLVGACILAWLFNQSYSFQHLTNDSFLGHVVAKKLGKPSSGAFLEGIIANMFVNLAILAYMLLKEESAKMTVILSAIFMFVFLSNEHLIANFASFMLAAFSHIEHIKGFTLLNVIRQWTLVFFGNWIGGGVFIGLAYAWLNKTKTSHHE
3TDX Chain:A ((10-259))
-----DKLTNAAINKINLLNTSKVKYLVSSAFAGLYVGI----GILLIFTIGGLLTDAGSP-MTKIVMGLSFAIALSLVIMTGTEVFTGNNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILCNILVCVSVLCSFRTNSDTAKIIMIFLCLFAFITSGFEHSVANMTIYSVSLFS--PTISTVTIGGAIYNLVAVTLGNIVGGALFMGLGTYILGKEK-----
General information:
TITO was launched using:
RESULT:
Template:
3TDX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -242607 for 2204 contacts (-110.1/contact) +
2D Compatibility (PS) -25980 + (NN) -12564 + (LL) 1528
1D Compatibility (HY) -22400 + (ID) 3600
Total energy: -305623.0 ( -138.67 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_3TDX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TDX-query.scw
PDB file :
Tito_Scwrl_3TDX.pdb
: