Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFNLEQVKVFENYEIENWEEGQVTLTTKVVDSSLNYYGNAHGGYLFTLCDQVSGLVAISTGYEAVTLQSNINYLRAGRLDDLLTVIGTCVHNGRTTKVVDVHIKNQKGEMVTTAIFTMFVTGERKEK
4XY6 Chain:A ((7-128))
--FHFDAISAFENYEIEKMRDGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDGVALQSSINYLKAGKLDDVLTIKGECVHQGRTTCVMDVDITNQEGRNVCKATFTMFVTGQ----
General information:
TITO was launched using:
RESULT:
Template:
4XY6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74651 for 905 contacts (-82.5/contact) +
2D Compatibility (PS) -13236 + (NN) -1817 + (LL) 604
1D Compatibility (HY) -16000 + (ID) 4050
Total energy: -109150.0 ( -120.61 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_4XY6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XY6-query.scw
PDB file :
Tito_Scwrl_4XY6.pdb
: