Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRLEIVDSKLRQAKKTEEYFNAIRTNIQFSGKENKI--LAITSVREGEGKSTTSTSLALSLAQAGFKTLLIDADTRNSVMSGTFKATGTIKGLTNYLSGNADLGDIICETNVPRLMVVPSGKVPPNPTALLQNAYFNKMIEAIKNIFDYIIIDTPPIGLVVDAAIIANACDGFILVTQAGRIKRNYVEKAKEQMEQSGSKFLGIILNKV--NESVATYGDYGDYGNYGKRDRKRK
2VED Chain:A ((64-267))
------------------EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGMSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNN-EGLSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYG-------------
General information:
TITO was launched using:
RESULT:
Template:
2VED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133879 for 1640 contacts (-81.6/contact) +
2D Compatibility (PS) -22123 + (NN) -11640 + (LL) 2124
1D Compatibility (HY) -16400 + (ID) 3400
Total energy: -185318.0 ( -113.00 by residue)
QMean score : 0.559
(partial model without unconserved sides chains):
PDB file :
Tito_2VED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VED-query.scw
PDB file :
Tito_Scwrl_2VED.pdb
: