Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLLYIFEKNIILRKILITFSLIIIFLLGRYVPIPGVLISAYKGQDNNFA-TLYSTVTGGNLSQVGVFSLGIGPMMTTMILLRLFT--------IGKYSSGVSQKVQQFRQNVVMLVIAIIQGLAIAISFQYHN------GFSLTKL-LLATMILVTGAYIISWIGNLNAEYGFG-GMTILVVVGMLVGQFNNIPLIFELFQDGYQLAIILFLLW-TLVAMYLMITFERSEYRIPVM--RTSIHNRLVDDA--YMPIKVNASGGMAFMYVYTLLMFPQYIIILLRSIFPTNPDITSYNDYFSLSSIQGVVIYMILMLVLSVAFTFVNIDPTKISEAMRESGDFIPNYRPGKETQSYLSKICYLFGTFSGFFMAFLGGVPLLFALGNDDLRTVSSMTGIFMMITGMSFMILDEFQVIRIRKQYTSVFENEEN |
3DIN Chain:C ((17-358)) | --------------RIIFTFLALIVFRMGIYIPVPGLN------------LSFYDVFTGGALSRFSVFTMSVTPYITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLL-IGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMSMLAGTMFLLWLGERITEKGIGNGISILIFAG-IVARYPS--YIRQAYLGGLNLLEWIFLIAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASI------TNNE--TLKNLFRAGGFLYLLIYGLLVFFFTYFYSVVIFDPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIGAVFLVVIALLPYLVQGAIKVNVWIGGTSALIAVGVALDIIQQMETHMVMRHYEGFIK------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DIN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153957 for 1901 contacts (-81.0/contact) +
2D Compatibility (PS) -30631 + (NN) -1945 + (LL) 3788
1D Compatibility (HY) -38000 + (ID) 4400
Total energy: -225145.0 ( -118.44 by residue)
QMean score : 0.168
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