Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKFLVECGLGSRTQVKLILKKKQISVNGNSETSPKVQVDEYRDEIKYNGT-LVSYEKFVYYMLHKPKGVISATDDPSHKTVLDLLDKTARDKAVFPVGRLDIDTTGLLLITNNGELAHKMLSPKKHVDKCYEAKISGIMTEDDILAFDKGIIL---KDFTCLPALLEIVEVNQVKKQSLVKITIKEGKFHQVKRMVAACGKEVLELKRLRMGNLQLDKQLESGQWRRLTIKEIEKLEKYMQ
1KSV Chain:A ((5-233))
-RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTK-PAVLEVITPTQVR------LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV----
General information:
TITO was launched using:
RESULT:
Template:
1KSV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94631 for 1622 contacts (-58.3/contact) +
2D Compatibility (PS) -23617 + (NN) -4061 + (LL) 1688
1D Compatibility (HY) -15200 + (ID) 4550
Total energy: -140371.0 ( -86.54 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_1KSV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KSV-query.scw
PDB file :
Tito_Scwrl_1KSV.pdb
: