Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MACIIRRARLGDEVNLAYIQTESWKAAFGKILPEDIIQKTTEIEPAITMYQQLLHKEVGKGYILEVDSNPHCMAWWDKSREDGMLDYAELICI----HSLKEGWG-------KGYGSQMMNHVLSEIQQAGYNKVILWVFTENTRARKFYDRFGFSFKGK-SKTYFEKEEMCYEKILH
3LD2 Chain:A ((74-178))
--------------------------------------------------------------IQKFESNTHFLVAKIKDKIVGVLDYSSLYPFPSGQHIVTFGIAVAEKERRKGIGRALVQIFLNEVK-SDYQKVLIHVLSSNQEAVLFYKKLGFDLEARLTKQFFLKGQYVDDLIYS
General information:
TITO was launched using:
RESULT:
Template:
3LD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16919 for 512 contacts (-33.0/contact) +
2D Compatibility (PS) -9532 + (NN) 2879 + (LL) 5664
1D Compatibility (HY) -10400 + (ID) 1500
Total energy: -29808.0 ( -58.22 by residue)
QMean score : 0.407
(partial model without unconserved sides chains):
PDB file :
Tito_3LD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LD2-query.scw
PDB file :
Tito_Scwrl_3LD2.pdb
: