Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MVNTKTLLPYKTMPVWTAQSIPKAFLEKHNTKEGTWAKLTILSGSLVFYQLSPDGEEISRHIFDASSDIPFVDPQVWHKVSPNSPDLSCYLTFYCQKEDYFHKKYGLTRTHSEVIASAPLLSEKSNILDLGCGQGRNSLYLSLLGHQVTSVDSNGQSLVALENMALEEELP-YNIKRYDINTAAIEGHYDFILSTVVFIFLNPDCISDIILQMQSHTQIGGYNLIVSAMDTAENPCPLPFPFTFKEGQLKSYYNDWEIIKYNENLGELHRVDENGNRLKLQFATLLARKLRS |
2XVM Chain:A ((6-198)) | -----------------------------------------------------------------------------------------------RDENYFTDKYELTRTHSEVLEAVKVV-KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2XVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -114442 for 1572 contacts (-72.8/contact) +
2D Compatibility (PS) -20503 + (NN) -6548 + (LL) 5940
1D Compatibility (HY) -20000 + (ID) 5050
Total energy: -160603.0 ( -102.16 by residue)
QMean score : 0.566
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