Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQSDMAIAAEHLLKTRHTLEKILADNSGQSIEKVHDDAERDRWMSAQETLDYGFIDAIMENNNLQ
3STA Chain:V ((4-190))
-IPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQG--QATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVP----
General information:
TITO was launched using:
RESULT:
Template:
3STA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113865 for 1402 contacts (-81.2/contact) +
2D Compatibility (PS) -20176 + (NN) -7971 + (LL) -48
1D Compatibility (HY) -22800 + (ID) 6000
Total energy: -170860.0 ( -121.87 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_3STA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3STA-query.scw
PDB file :
Tito_Scwrl_3STA.pdb
: