Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGTMILIAIIALFVIWLIVAYNSLVRSRMHTK--ESWSQIDVQLKRRNDLIPNLIETVKGYAAYEGKTLEKIAELRAQVAKANTPAEAMTASNELTRQLSSILAVAENYPDLKANNSFVKLQEELTNTENKISYSRQLYNTTTSNYNVKLETFPSNIVGKLFGFKPSQFLETPEEEKEVPKVSFDF |
1JQG Chain:A ((113-178)) | -------------------------RSRLSFDKIHSYEEVDAYLQELAKEFPNVVTVVEGGKSFEGRSIKYLRISTTNFQDASKPVVMMQSLLHCREWVTLPATLYAIHKLVIDVTESDLINNIDWIILPVANPDGYVHTFGGDRYWRKNRATGYMAGNLCMGVDLNRNFGMNWGTASSSSVCSDT |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JQG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 7982 for 301 contacts (26.5/contact) +
2D Compatibility (PS) -6490 + (NN) 3600 + (LL) 3504
1D Compatibility (HY) -3600 + (ID) 750
Total energy: 4246.0 ( 14.11 by residue)
QMean score : 0.199
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