Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKYEILYIIRPNIEEEAKNALVARFDSILSDNGATVVESKDWEKRRLAYEIQDFTEGLYHIVNVEAEDAVALNEFDRLSKINGDILRHMIVKVD
2YKR Chain:F ((1-92))
MRHYEIVFMVHPDQSEQVP-GMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEV-IDELETTFRFNDAVIRSMVMRTK
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57687 for 727 contacts (-79.3/contact) +
2D Compatibility (PS) -9665 + (NN) -3617 + (LL) 64
1D Compatibility (HY) -9600 + (ID) 1200
Total energy: -81705.0 ( -112.39 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: