Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIEITWTVKYITEFIATAFLIILGNGAVANVDLKGTKGNNSGWIIIAIGYGLGVMMPALMFGNVSGNHINPAFTLGLAFSGLFPWAHVGQYILAQILGAMFGQLVVVMVYQPYFVKTENPNHVL-GSFSTISALDDGQKSSRKAAYIN---GFLNEFVGSFVLFFGALALTKNYFGVELVGKLVQAGYDQTTAATRISPYVTGSLAVAHLGIGFLVMTLVASLGGPTGPALNPARDLGPRIVHRLLP-KQILGQAKEDSKWWYAWVPVLAPIVASILAVALFKLLYL |
| 1LDA Chain:A ((10-254)) | --------QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQ--WEISVI-WGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDL--AGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVP-----------------------RGPL--APLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIP--YFLVPLFGPIVGAIVGAFAYRKLIG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LDA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138701 for 2131 contacts (-65.1/contact) +
2D Compatibility (PS) -24802 + (NN) -6103 + (LL) 3268
1D Compatibility (HY) -24800 + (ID) 4250
Total energy: -195388.0 ( -91.69 by residue)
QMean score : 0.269
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