Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKERELRRTMAVFPIGTVMKLTDLTARQIRYYEDQGLITP-ERTEGNRRMFSLNDMDRLLEIKDFISDGLHISDIKNEYMQRQHKSKEKQKSLSDAEVRRLLQDELRNQGRFSSPSQHIGNMHL
3HH0 Chain:A ((2-72))
-----------AWLISEFASVGDVTVRALRYYDKINLLKPSDYTEGGHRLYTKDDLYVLQQIQSFKHLGFSLGEIQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQKE
General information:
TITO was launched using:
RESULT:
Template:
3HH0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37325 for 443 contacts (-84.3/contact) +
2D Compatibility (PS) -7413 + (NN) -1343 + (LL) 1360
1D Compatibility (HY) -6400 + (ID) 1100
Total energy: -52221.0 ( -117.88 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3HH0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HH0-query.scw
PDB file :
Tito_Scwrl_3HH0.pdb
: