Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIALFAGG------DLTYFEYDFDYFVGIDRGSLFLLKNGLSLDMAVGDFDSITEDELLYIKHYCSNIVSASAEKNDTDTELALKTIFKEFPEAQVTVFGAFGGRIDHMMSNIFL---PSDTDLEPFMSQIRLKDEQNIVTYLPSGKNQVSRIEGMSYVSFMPESEST--LQISGAKYELNKSNY-FKKKMYSSNEFMTSPIEVELKDGYLIIIYSKDRG
3LM8 Chain:A ((4-214))
---INIVAGGPKNLIPDLTGYTDEHTLWIGVDKGTVTLLDAGIIPVEAFGDFDSITEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDI-IQIFGITGGRADHFLGNIQLLYKGVKTNI-----KIRLIDKQNHIQMFPPGEYDIEKDENKRYISFIPFSEDIHELTLTGFKYPLNNCHITLGSTLCISNELIHSRGTFSFVKGILIMIRSTDL-
General information:
TITO was launched using:
RESULT:
Template:
3LM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123104 for 1491 contacts (-82.6/contact) +
2D Compatibility (PS) -21426 + (NN) -8360 + (LL) 820
1D Compatibility (HY) -13600 + (ID) 3750
Total energy: -169420.0 ( -113.63 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_3LM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LM8-query.scw
PDB file :
Tito_Scwrl_3LM8.pdb
: