Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKRIWYLIIIITVILGGLAMKNLFATTEASSRKQEQDRVVKYIKQHVELTNGDQIKKVEFIDFQKNEMTGTW---GISTKINEQFSISFS---EDRIGGKLRALGYQPNEIGFSKDINSNNQNVNDIEVIYMKEE |
5A1V Chain:E ((750-814)) | -----------------------------------------EYVLEDLEVTVADHIQKVMKVNFE-----AAWDEVGDEFEKEETFTLSTIKTLEEAVGNIVKFLGMHPCERSDKVPENKNTHTLLLAGVFRGGHD |
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General information:
TITO was launched using:
| RESULT:
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Template: 5A1V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 8569 for 239 contacts (35.9/contact) +
2D Compatibility (PS) -6399 + (NN) -2351 + (LL) 4684
1D Compatibility (HY) -4400 + (ID) 300
Total energy: -197.0 ( -0.82 by residue)
QMean score : 0.068
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