Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNGFSHFNEQGRAQMVDISEKSSTVRTAAAVSSVHMKNEVYEKIQSHDIGKGDVLAVAQVAGIMAAKQTSNIIPMCHPLSLSGVDISFDWKIKEAEVILHIKAQVKTKGSTGVEMEALTSASVCALTVYDMCKALDKGMVIGPTFLLEKTGGKNGDFKRELSEYNLEDQK
3JQJ Chain:A ((9-155))----------GRPRMVDVTEKPETFRTATAEAFVELTEEALSALEKGGVGKGDPLVVAQLAGILAAKKTADLIPLCHPLPLTGVEVRVE--LLKAEKRVRIEATVKTKAETGVEMEAMTACAVAALTVYDMLKAASKGLVISQVRLLHKAGGKSGEWRR-----------


General information:
TITO was launched using:
RESULT:

Template: 3JQJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 761 -78807 -103.56 -536.10
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.86

3D Compatibility (PKB) : -103.56
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.86
QMean score : 0.453

(partial model without unconserved sides chains):
PDB file : Tito_3JQJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3JQJ-query.scw
PDB file : Tito_Scwrl_3JQJ.pdb: