Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAALPAPEKLLRSDFPVLWPVGTRWADNDMFGHLNNAVYYQLFDTAINAWINTSTGVDPLAMPVLGIVAESGCRYFSELRFPESLMVGLAVTRLGRSSVTYRLGVFKEPDDAGVITALGHWVHVYVDRTSRRPVPIPEAIRSLLSTACVSG
2O6U Chain:A ((6-140))
-----RP---LREQYLHFQPISTRWHDNDIYGHVNNVTYYAFFDTAVNTYLIERGGLDIQGGEVIGLVVSSSCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALFLEGQREA--CAAGRFVHVFVERRSSRPVAIPQELRDALA------
General information:
TITO was launched using:
RESULT:
Template:
2O6U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95278 for 992 contacts (-96.0/contact) +
2D Compatibility (PS) -14887 + (NN) -9847 + (LL) 1516
1D Compatibility (HY) -14400 + (ID) 3000
Total energy: -135896.0 ( -136.99 by residue)
QMean score : 0.406
(partial model without unconserved sides chains):
PDB file :
Tito_2O6U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O6U-query.scw
PDB file :
Tito_Scwrl_2O6U.pdb
: