Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSSIEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQAQQIEWSKVHLFWGDERYVPEDDDERNLKQARRALLNHVDIPSNQVHPMAASDGDFGGDLDAAALAYEQVLAASAAPGDPAPNFDVHLLGMGPEGHINSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIGGADPVSVPAAGAVGRQNTLWLLDRDAAAKLPS
4TM7 Chain:A ((32-256))
------------------GDRLVDAISSAIGERGQATIVLTGGGTGIGLLKRVRERSGEIDWSKVHIYWGDERFVPQDDDERNDKQAREALLDHIGIPPVNVHAMAASDGEFGDDLEAAAAGYAQLLSADFDSS--VPGFDVHLLGMGGEGHVNSLFPDTDAVRETERLVVGVSDSPKPPPRRITLTLPAVQNSREVWLVVSGEAKADAVAAAVGGADPVDIPAAGAVGRERTVWLVDEAAAAKL--
General information:
TITO was launched using:
RESULT:
Template:
4TM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120912 for 1962 contacts (-61.6/contact) +
2D Compatibility (PS) -25518 + (NN) -27951 + (LL) 1068
1D Compatibility (HY) -22800 + (ID) 7600
Total energy: -203713.0 ( -103.83 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_4TM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TM7-query.scw
PDB file :
Tito_Scwrl_4TM7.pdb
: