Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQLDSRSASARIRVFDQQRAEAAVRELLYAIGEDPDRDGLVATPSRVARSYREMFAGLYTDPDSVLN-TMFDEDHDELVLVKEIPMYSTCEHHLVAFHGVAHVGYIPGDDGRVTGLSKIARLVDLYAKRPQVQERLTSQIADALMKKLDPRGVIVVIEAEHLCMAMRGVRKPGSVTTTSAVRGLFKTNAASRAEALDLILRK
1WPL Chain:A ((53-228))
----------------------AAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDVLNDAIFDEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLP--NKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTLI---
General information:
TITO was launched using:
RESULT:
Template:
1WPL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92131 for 1309 contacts (-70.4/contact) +
2D Compatibility (PS) -19589 + (NN) -11066 + (LL) 2036
1D Compatibility (HY) -18400 + (ID) 4600
Total energy: -143750.0 ( -109.82 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_1WPL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WPL-query.scw
PDB file :
Tito_Scwrl_1WPL.pdb
: