Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSFDKVSTYYGKIQALHDVSVEVKKGEIVTLIGANGAGKSTLLMTLCGSPQAASGSIRYEGEELVGLPSSTIMRKSIAVVPEGRRVFSRLTVEENLAMGGF--------------FTDKDDYQVQMD-KVLELFPRLKERYEQRAGTMSGGEQQMLAIGRALMSKPKLLLLDEPSLGLAPIIIQQIFEIIEQLRREGVTVFLVEQNANQALKLADRAYVLENGRIVMHDTG----AALLTNPKVRDAYLGG
1GAJ Chain:A ((7-256))
ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILE-FLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLSDPKVVEIYIGE
General information:
TITO was launched using:
RESULT:
Template:
1GAJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150211 for 1855 contacts (-81.0/contact) +
2D Compatibility (PS) -25325 + (NN) -10154 + (LL) 176
1D Compatibility (HY) -20800 + (ID) 3800
Total energy: -210114.0 ( -113.27 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_1GAJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GAJ-query.scw
PDB file :
Tito_Scwrl_1GAJ.pdb
: