Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRRAPMFKPLPITLQRGALRLEPLVEADIPELVSLAEANREALQYMD-GPTRPDWYRQSLAEQREGRA-----LPLAVRLGVQLVGTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVLRNHRRLAGGRLDDTFVYSITDHEWPQVKAALEASFTG
2Z10 Chain:A ((13-188))
-------------------VRLEPLALAHLPAF--LRHYDPEVYRFLSRAPVAPT--EEALRAHLEGLLGEPGRVNWAILFGKEVAGRISVIAPEPEHAKLELG-TMLFKPFWGSPANKEAK-LLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEEWPGVKARLEARLY-
General information:
TITO was launched using:
RESULT:
Template:
2Z10.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51456 for 1231 contacts (-41.8/contact) +
2D Compatibility (PS) -18003 + (NN) -2662 + (LL) 1796
1D Compatibility (HY) -11600 + (ID) 3300
Total energy: -85225.0 ( -69.23 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_2Z10.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z10-query.scw
PDB file :
Tito_Scwrl_2Z10.pdb
: