Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMPDEALVYVVDDDQGMLESTVWLLESVGLKARPFTQGRDFLDACEGGRHACVLLDVRMPGMGGLNVQDELLARGIDLPVIFVSGHADVPIVVRAFKAGAVDFIEKPYNEQLLLDSVQQALDRHARRRRHHDLDAGLHERLDSLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMKRMQAQTLPELVGMAIAAGLVDPLRLREGT
1DCK Chain:A ((6-118))
--------VHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERA---------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1DCK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94315 for 860 contacts (-109.7/contact) +
2D Compatibility (PS) -12188 + (NN) -5825 + (LL) 8416
1D Compatibility (HY) -10400 + (ID) 1950
Total energy: -116262.0 ( -135.19 by residue)
QMean score : 0.719
(partial model without unconserved sides chains):
PDB file :
Tito_1DCK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DCK-query.scw
PDB file :
Tito_Scwrl_1DCK.pdb
: