Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
1I4L Chain:D ((2-178))
-QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC-------------
General information:
TITO was launched using:
RESULT:
Template:
1I4L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131603 for 1420 contacts (-92.7/contact) +
2D Compatibility (PS) -18905 + (NN) -9839 + (LL) 792
1D Compatibility (HY) -24400 + (ID) 6350
Total energy: -190305.0 ( -134.02 by residue)
QMean score : 0.672
(partial model without unconserved sides chains):
PDB file :
Tito_1I4L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1I4L-query.scw
PDB file :
Tito_Scwrl_1I4L.pdb
: