Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
3GEP Chain:A ((3-217))
---RSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKS---DQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
General information:
TITO was launched using:
RESULT:
Template:
3GEP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189537 for 1641 contacts (-115.5/contact) +
2D Compatibility (PS) -23680 + (NN) -13568 + (LL) 472
1D Compatibility (HY) -33600 + (ID) 10550
Total energy: -270463.0 ( -164.82 by residue)
QMean score : 0.652
(partial model without unconserved sides chains):
PDB file :
Tito_3GEP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GEP-query.scw
PDB file :
Tito_Scwrl_3GEP.pdb
: