Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAFLWAQDRDGLIGKDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESFPKRPLPERTNVVLTHQEDYQAQGAVVVHDVAAVFAYAKQHPDQELVIAGGAQIFTAFKDDVDTLLVTRLAGSFEGDT---KMIPLNWDDFTKVSSRTVEDTNPALTHTYEVWQKKA
3JWC Chain:A ((9-167))
-VSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAI-GRPLPGRRNIIVTRNEGYHVEGCEVAHSVEEVFELCKN--EEEIFIFGGAQIFDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKE-VFVEKGLTDEKNP-YTYYYHVYEKQ-
General information:
TITO was launched using:
RESULT:
Template:
3JWC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82393 for 1113 contacts (-74.0/contact) +
2D Compatibility (PS) -16903 + (NN) -5458 + (LL) 392
1D Compatibility (HY) -16000 + (ID) 3200
Total energy: -123562.0 ( -111.02 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_3JWC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JWC-query.scw
PDB file :
Tito_Scwrl_3JWC.pdb
: