Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTSAASQASLPRGRRTARPSGDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGENR
3O8G Chain:A ((42-235))
---------------------GDDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGINVFFETFGSHKAVTRAGQAARATSVEVAELWSTFMQKWIAYTAAVIDAERDRGAAPRTLPAHELATALNLMNERTLFASFAGEQPSVPEARVLDTLVHIWVTSIYGEN-
General information:
TITO was launched using:
RESULT:
Template:
3O8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105688 for 1370 contacts (-77.1/contact) +
2D Compatibility (PS) -21404 + (NN) -17280 + (LL) 1172
1D Compatibility (HY) -24800 + (ID) 9700
Total energy: -177700.0 ( -129.71 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_3O8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O8G-query.scw
PDB file :
Tito_Scwrl_3O8G.pdb
: