Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
3OD5 Chain:A ((8-268))
-------FDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPL---------------------VYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPK--
General information:
TITO was launched using:
RESULT:
Template:
3OD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153909 for 1892 contacts (-81.3/contact) +
2D Compatibility (PS) -25530 + (NN) -6392 + (LL) 2036
1D Compatibility (HY) -37200 + (ID) 12000
Total energy: -232995.0 ( -123.15 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_3OD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OD5-query.scw
PDB file :
Tito_Scwrl_3OD5.pdb
: