Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTITIGGSEIYTGQLHGVDVALLKSGIGKVAAATGATLLLERCQPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLVAAAEDCIKALDLNAVRGLIVSGDAFINGSVALAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFLAVAARQSTLMVENLVQNLARG
4F2W Chain:A ((17-247))
MKIGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDETRYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSTLMVETLVQKLAH-
General information:
TITO was launched using:
RESULT:
Template:
4F2W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167681 for 2072 contacts (-80.9/contact) +
2D Compatibility (PS) -25231 + (NN) -17364 + (LL) -172
1D Compatibility (HY) -32000 + (ID) 10300
Total energy: -252748.0 ( -121.98 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_4F2W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F2W-query.scw
PDB file :
Tito_Scwrl_4F2W.pdb
: