Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
2Y6C Chain:A ((2-165))
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTY----PQNFKLSQDDIKGIQKLY---------
General information:
TITO was launched using:
RESULT:
Template:
2Y6C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75103 for 1240 contacts (-60.6/contact) +
2D Compatibility (PS) -17334 + (NN) -11696 + (LL) -416
1D Compatibility (HY) -21200 + (ID) 8000
Total energy: -133749.0 ( -107.86 by residue)
QMean score : 0.790
(partial model without unconserved sides chains):
PDB file :
Tito_2Y6C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y6C-query.scw
PDB file :
Tito_Scwrl_2Y6C.pdb
: