Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
3UH4 Chain:A ((9-213))
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERH---GGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTIKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAP-
General information:
TITO was launched using:
RESULT:
Template:
3UH4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63504 for 1551 contacts (-40.9/contact) +
2D Compatibility (PS) -22175 + (NN) -10130 + (LL) 412
1D Compatibility (HY) -26000 + (ID) 10050
Total energy: -131447.0 ( -84.75 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_3UH4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UH4-query.scw
PDB file :
Tito_Scwrl_3UH4.pdb
: