Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDVLSPGQGNNTTSPPAPFETGGNTTGISDVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQVLNK-WTLGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAAL-ISLTWLIGFLISIP-PMLGWRTPEDRSDPDACTISKDH--GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADTRHGASPAPQPKKSVNGESGSRNWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHR--------VGNSKEHLPLPSEAGPTPCAPASFERKNERNAEAKRKM-ALARERKTVKTLGIIMGTFILCWLPFFIVALVLPFCESSCHMPTL--LGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFCRQ |
| 4NC3 Chain:A ((33-415)) | ---------------------------------------ALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQ-ANQYNSRATAFIKITVVWLISIGIAIPVPIKGIET-VDNPNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFL-----------TIHALQKKAADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRA-----------------------KDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLQTISNEQRASKVLGIVFFLFLLMWCPFFITNITLVLCD-SCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITCNYR-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4NC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -209410 for 2466 contacts (-84.9/contact) +
2D Compatibility (PS) -34898 + (NN) -2994 + (LL) 3632
1D Compatibility (HY) -40400 + (ID) 6000
Total energy: -290070.0 ( -117.63 by residue)
QMean score : 0.324
|
|
|