Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDPLNLSWYDDDLERQNWSRPFNGSDGKADRPHYNYYATLLTLLIAV-IVFGNVLVCMAVSREKALQTTTNYLIVSLAVADLLVATLVMPWVVYLEVVGE--WKFSRIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLYNTRYSSKRRVTVMISIVWVLSFTISCPL-LFGL---NNADQNECIIANP---AFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRVNTKRSSRAFRAHLRAPLKGNC-THPEDMKLCTVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHHG---LHSTPDSPAKPEKNGHAKDHPKIAKIFEIQTMPNGKTRTSLKTMSRRKLSQQKEKKATQMLAIVLGVFIICWLPFFITHILNIHCD-CN--IPPVLYSAFTWLGYVNSAVNPIIYTTFNIEFRKAFLKILHC |
| 4NC3 Chain:A ((23-413)) | ----------------------------EEQGNKLHWAALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMP-IALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQAN-QYNSRATAFIKITVVWLISIGIAIPVPIKGIETVDNPNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTY---FLTIHALQKKA--------------ADLEDNWETLNDNLK---VIEKADNAAQV--KDALTKMRA--------------------------KDF------RHGFDILVGQIDDALKLANEGKVKEAQAAAE--QLKTTRNAYIQKYLQTISN-------EQRASKVLGIVFFLFLLMWCPFFITNITLVLCDSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITC |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233884 for 2520 contacts (-92.8/contact) +
2D Compatibility (PS) -35177 + (NN) 4041 + (LL) 4340
1D Compatibility (HY) -40400 + (ID) 6450
Total energy: -307530.0 ( -122.04 by residue)
QMean score : 0.245
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