Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASILNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALM-ITAVWVLAFAVSCPL-LFGFNTTGD---PTVCSISNP---DFVIYSSVVSFYLPFGVTVLVYARIYVVLKQR-------------------------RRKRILTRQNSQCNSVRPGFPQQTLSPDPAHLELKRYYSICQDTALGGPGFQERGGELKREEKTRNSLSPTIAPKLSLEVRKLSNGRLSTSLKLGPLQPRGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVS--PELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC |
| 4NC3 Chain:A ((24-413)) | -----------------------EQGNKLHWAALLILMVIIPTIGGNTLVILAVSLEKKLQYATNYFLMSLAVADLLVGLFVMPIALLTIMFEAMWPLPLVLCPAWLFLDVLFSTASIWHLCAISVDRYIAIKKPIQ----ANQYNSRATAFIKITVVWLISIGIAIPVPIKGIET-VDNPNNITCVLTKERFGDFMLFGSLAAFFTPLAIMIVTYFLTIHALQKKAADLEDNWETLNDNLKVIEKADNAAQVKDALTKMRA-----------------------KDFRH----------GFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLQTIS--------NEQRASKVLGIVFFLFLLMWCPFFITNITLVLCDSCNQTTLQMLLEIFVWIGYVSSGVNPLVYTLFNKTFRDAFGRYITC |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221094 for 2354 contacts (-93.9/contact) +
2D Compatibility (PS) -33801 + (NN) -6570 + (LL) 2452
1D Compatibility (HY) -35200 + (ID) 5350
Total energy: -299563.0 ( -127.26 by residue)
QMean score : 0.297
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