Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVFSAVLTAFHTGTSNTTFVVYENTYMNITLPPPFQHPDLSPLLRYSFETMAPTGLSSLTVNSTAVPTTPAAFKSLNLPLQITLSAIMIFILFVSFLGNLVVCLMVYQKAAMRSAINILLASLAFADMLLAVLNMPFALVTILTTRWIFGKFFCRVSAMFFWLFVIEGVAILLIISIDRFLIIV---QRQDKLNPYRAKVLIAVSWATSFCVAF-PLAV-----GNPDLQIPSRAPQCVFGYTTNPGYQAYVILISLISFFIPFLVILYSFMGILNTLRHNALRIHSYPEGICLSQASKLGLMSLQRPFQMSIDMGFKTRAFTTILILFAVFIVCWAPFTTYSLVATFSKHFYYQHNFFEISTWLLWLCYLKSALNPLIYYWRIKKFHDACLDMMPKSFKFLPQLPGHTKRRIRPSAVYVCGEHRTVV |
| 2YCZ Chain:A ((11-299)) | --------------------------------------------------------------------------------EAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDPGCC-DFVTN---RAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKI---------DRASKRKRVMLMR----------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFN----WLGYANSAMNPIIYC-RSPDFR--------KAFKRLLAF----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -286193 for 2049 contacts (-139.7/contact) +
2D Compatibility (PS) -28831 + (NN) -8998 + (LL) 8048
1D Compatibility (HY) -31600 + (ID) 4350
Total energy: -351924.0 ( -171.75 by residue)
QMean score : 0.223
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