Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRLANQTLGGDFFLLGIFSQISHPGRLCLLIFSIFLMAVSWNITLILLIHIDSSLHTPMYFFINQLSLIDLTYISVTVPKMLVNQLAKDKTISVLGCGTQMYFYLQLGG--------AECCLLAAMAYDRYVAICHPLRYSVLMSHRVCLLLASGCWFVGSVDGFMLTPIAMSFPFCRSHEIQHFFC-EVPAVLKLSCSDTSLYKIFMYLCCVIMLLIPVTV-ISVS---YYYIILTIHKMNSVEGRKKAFTTCSSHITVVSLFYGAAIYN-----YMLPSSYQTPEKDMMSSFFYTIL------TPVLNPIIYSFRNKDVTRALKKMLSVQKPPY |
2YCZ Chain:A ((9-298)) | --------------------QWEAG-MSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPF--------GATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFL--PIMMH--WWRDEDPQALKCYQDPG-----CCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLM-REHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YCZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -194073 for 1790 contacts (-108.4/contact) +
2D Compatibility (PS) -26486 + (NN) -3118 + (LL) 3532
1D Compatibility (HY) -19200 + (ID) 3500
Total energy: -242845.0 ( -135.67 by residue)
QMean score : 0.101
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