Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSTLPTQIAPNSSTSMAPTFLLVGMPGLSGAPSWWTLPLIAVYLLSALGNGTILWIIALQPALHRPMHFFLFLLSVSDIGLVTALMPTLLGIALAGAHTVPASACLLQMVFIHVFSVMESSVLLAMSIDRALAICRPLHYPALLTNGVISKISLAISFRCLGLHLPLPFLLAYMPYCLPQVLTHSYCLHPDVARL---ACPEAWGAA---------YSLFVVLSAMGLDPLLIFFSYGL-----IGKVLQGVESREDRWKAGQTCAAHLSAVL-----LFYIPMILLALINHPEL--PITQHTHTLLSYVHFLLP---PLINPILYSVKMKE--------IRKRILNRLQPRKVGGAQ |
| 2YDO Chain:A ((6-320)) | ------------------------------SSVYITVEL-AIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIP--FAIAISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVT-GTRAKGIIAICW-------VLSFAIGLTP-----MLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMES-------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAAE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -219912 for 1909 contacts (-115.2/contact) +
2D Compatibility (PS) -28014 + (NN) -12463 + (LL) 2980
1D Compatibility (HY) -24400 + (ID) 3900
Total energy: -285709.0 ( -149.66 by residue)
QMean score : 0.332
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