Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAQVRALHKIMALFSANSIGAMNNSDTRIAGCFLTGI-PGLEQLHIW---LSIPFCIMYITALEGNGILICVILSQAILHEPMYIFLSMLASADVLLSTTTMPKALA----------NLWLGYSLISFDG-CLTQMFFIHFLFIHSAVLLAMAFDRYVAICSPLRYVTILTSKVIGKIVTAALSHSFIIMFPSIFLLEHLHYCQINIIAHTFCEHMGIAHLSCSDISINVWYGLAAALLSTGLDIMLITVSYIHILQAVFRLLSQDAR-----SKALSTCGSHICVILLFYVPALFSVFAYRFGGRSVPCYVHILLASLYVVIPPMLNPVIYGVRTKPILEGAKQMFSNLAKGSK |
| 4LDL Chain:A ((135-447)) | LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEF-WTSIDVLCVTASI---------ETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMV----WIVSGLTSFLPIQMHWYRATHQEAINC----YAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQ---KFALKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYV-NSGFNPLIYCRSPDFRIAFQELLCL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -282998 for 2038 contacts (-138.9/contact) +
2D Compatibility (PS) -29591 + (NN) -4805 + (LL) 2052
1D Compatibility (HY) -20800 + (ID) 3650
Total energy: -339792.0 ( -166.73 by residue)
QMean score : 0.176
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