Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDLKNGSLVTEFILLGFFGRWELQIFFFVTFSLIYGATVMGNILIMVTVTCRSTLHSPLYFLLGNLSFLDMCLSTATTPKMIIDLLTDHKTISVWGCVTQMFFMHFFGGAEMTLLIIMAFDRYVAICKPL-HYRTIMSHKLLKGFAILSWIIGFLHSISQIV-LTMNLP-----FCG------HNVINNIFCDLPLVIKLACIETYTLELFVIA--DSGLLSFTCFILLLVSYIVILVSVPKKSSHGLSKALSTLSAHIIVVTLFFGPCIFIYV----WPFSSLASN-----KTLAVFYTVITPLLNPSIYTLRNKKMQEAIRKLRFQYVSSAQNF |
| 1F88 Chain:A ((55-315)) | -----------------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIM-GVA-FTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNN--------------ESFVIYMFVVHFIIPLIVIFFCYGQLV--FTVKEAAA----SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179160 for 1770 contacts (-101.2/contact) +
2D Compatibility (PS) -22907 + (NN) 1888 + (LL) 5512
1D Compatibility (HY) -18400 + (ID) 2950
Total energy: -216017.0 ( -122.04 by residue)
QMean score : 0.341
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