Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------AVSCGQVSSA--LSPCISYARGNG-----------------ASPSAACCSGVRSLASSARSTADKQAACKCIK------SAAAGLNAGKAAGIPTKCGVSVPYA---ISSSVDCSKIR
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS---
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13760 for 554 contacts (-24.8/contact) +
2D Compatibility (PS) -8530 + (NN) 3602 + (LL) 368
1D Compatibility (HY) -400 + (ID) 650
Total energy: -19370.0 ( -34.96 by residue)
QMean score : 0.267
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: