Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------APRGAHGAGECGKTPADKMALKLAPCASAGQDPKSAPSSG---------------------CCAAVHTIGKQSPKCLCAVMLSDTAKSAGIKP----------EAAMSIPKRCNLVDRPVGYKCGAYTLP
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRK---DLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12276 for 640 contacts (-19.2/contact) +
2D Compatibility (PS) -9209 + (NN) -6848 + (LL) 692
1D Compatibility (HY) -1600 + (ID) 800
Total energy: -30041.0 ( -46.94 by residue)
QMean score : 0.248
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: