Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----AEGPAGCQDDVVALN--EACYQYVQKGAPTVPPS----------QECCDAVRRVDVPCVCSYLGS------PGVRDNISMEKVFYVSQQCGVSIPGNCGGSKV
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-SQPCQM---
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28924 for 502 contacts (-57.6/contact) +
2D Compatibility (PS) -8565 + (NN) -4720 + (LL) 432
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -45277.0 ( -90.19 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: