Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APAGTTCEQLESVARSCTGYLKRSLIFLNDACCDGAESVYDALTTDAAVDLGFVCRCLRGFVISESL-RPYLYRVANLPRLCRFKDRGPIPYNNSTIHDCRFSGTTRHSL
1AFH Chain:A ((2-89))
----ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTA--DRRAACNCLKNAA--AGVSGLNAGNAASIPSKCGV----SIPYTISTSTDC----------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77672 for 715 contacts (-108.6/contact) +
2D Compatibility (PS) -8847 + (NN) -254 + (LL) 832
1D Compatibility (HY) 800 + (ID) 1300
Total energy: -86441.0 ( -120.90 by residue)
QMean score : 0.248
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: