Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------ATSSSSSSQLHCGTVTSLLSGCAAFVRGHGGGAQLPSPGTP-----CCDGVAGLYAVAADSADNW------------RAVCRCMARLVRRHSSNASAI-------------------------ALLPGVCGVVSPWTFAAGNTNSNRPYCRSLP---
1G5Z Chain:A ((40-203))
PNLTEISKKITESNAVVLAVKEVETLLASIDELATKAIGKKIGN-NGLEANQSKNTSLLSGAYAISDLIAEKLNVLKNEELKEKIDTAKQCSTEFTNKLKSEHAVLGLDNLTDDNAQRAILKKHANKDKGAAELEKLFKAVENLSKAAQDTLKNAVKELTSPIVA
General information:
TITO was launched using:
RESULT:
Template:
1G5Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63326 for 685 contacts (-92.4/contact) +
2D Compatibility (PS) -11048 + (NN) -64 + (LL) -28
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -77116.0 ( -112.58 by residue)
QMean score : 0.258
(partial model without unconserved sides chains):
PDB file :
Tito_1G5Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G5Z-query.scw
PDB file :
Tito_Scwrl_1G5Z.pdb
: