Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QDNNPLEHCRDVFVSFMPCMGFVEGIFQQPSPDCCRGVTHLNNVVKFTSPGSRNRQDSGETERVCLCIEIMGNANHLPFLPAAINNLPLRCSLTLSFPISVDMDCSQFRNTK-NPDVEKLN-
3NPP Chain:A ((1-87))
GRFNPFIHQQDVYVQIDR-----------------DGRHLSPGGTEYTLDGY---NASGKKEEVTFFAG---------------KELRKNAYLKVKAKGKYVETWEEVKFEDMPDSVQSKLK
General information:
TITO was launched using:
RESULT:
Template:
3NPP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18474 for 519 contacts (-35.6/contact) +
2D Compatibility (PS) -9308 + (NN) -3907 + (LL) 1736
1D Compatibility (HY) -800 + (ID) 800
Total energy: -31553.0 ( -60.80 by residue)
QMean score : 0.280
(partial model without unconserved sides chains):
PDB file :
Tito_3NPP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NPP-query.scw
PDB file :
Tito_Scwrl_3NPP.pdb
: