Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-QNICPRVNRIVPPCVAYGLGRAPIAP---CCRALNDLRFVNTRNLRRAACRCLVGVVSRNPGLTQNPRFQNIPRDCRNTFVRPFWWRPRIQCGRINLTDKLIYLDAEE
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHAD-------FACLCGYKNSPWLGSFGVD-PELASALPKQCGLA--------NAPTC----------------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37720 for 496 contacts (-76.0/contact) +
2D Compatibility (PS) -7506 + (NN) -3532 + (LL) 2632
1D Compatibility (HY) -800 + (ID) 650
Total energy: -47576.0 ( -95.92 by residue)
QMean score : 0.190
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: